At the time of inception of PMSA in 1987, the PMSA Headquarters was located in a hired building in Karachi. Today, HQs PMSA is located a custom made new building in Karachi which was inaugurated on 15 January 2011 by Chief of the Naval Staff.
Location of the building is adjacent to KS & EW and in close proximity of the Karachi Fish Harbour. There is a sea front, where construction of wharf is planned for berthing of PMSA units in future. The site is also near PN Dockyard and KS & EW, whose repair/maintenance facilities are utilized by the PMSA Fleet.
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